methylcheck
feature/v0.8.4
Contents:
Loading Data
Filtering Probes
Quality Control
Custom QC with pOOBAH
Outlier Detection
API Reference
methylcheck.cli
methylcheck.run_pipeline
methylcheck.run_qc
methylcheck.read_geo
methylcheck.load
methylcheck.load_both
methylcheck.qc_signal_intensity
methylcheck.plot_M_vs_U
methylcheck.plot_controls
methylcheck.plot_beta_by_type
methylcheck.probes
methylcheck.list_problem_probes
methylcheck.exclude_probes
methylcheck.exclude_sex_control_probes
methylcheck.drop_nan_probes
methylcheck.samples
methylcheck.sample_plot
methylcheck.beta_density_plot
methylcheck.mean_beta_plot
methylcheck.mean_beta_compare
methylcheck.beta_mds_plot
methylcheck.combine_mds
methylcheck.cumulative_sum_beta_distribution
methylcheck.predict
methylcheck.get_sex
methylcheck.assign
Loading Data
ReportPDF
Report Builder class
Run QC pipeline
filtering probes
plotting functions
sex prediction
methylprep (preprocessing) package
methylize (analysis) package
Release History
methylcheck
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API Reference
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methylcheck.predict
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methylcheck.predict
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