methylcheck package

methylcheck.cli
methylcheck.run_pipeline
methylcheck.run_qc
methylcheck.read_geo
methylcheck.load
methylcheck.load_both
methylcheck.qc_signal_intensity
methylcheck.plot_M_vs_U
methylcheck.plot_controls
methylcheck.plot_beta_by_type
methylcheck.probes
methylcheck.list_problem_probes
methylcheck.exclude_probes
methylcheck.exclude_sex_control_probes
methylcheck.drop_nan_probes
methylcheck.samples
methylcheck.sample_plot
methylcheck.beta_density_plot
methylcheck.mean_beta_plot
methylcheck.mean_beta_compare
methylcheck.beta_mds_plot
methylcheck.combine_mds
methylcheck.cumulative_sum_beta_distribution
methylcheck.predict
methylcheck.get_sex
methylcheck.assign

methylcheck pipeline functions

methylcheck.probes module

methylcheck.samples module

methylcheck.predict module