methylcheck package

methylcheck.cli module

class methylcheck.cli.DefaultParser(prog=None, usage=None, description=None, epilog=None, parents=[], formatter_class=<class 'argparse.HelpFormatter'>, prefix_chars='-', fromfile_prefix_chars=None, argument_default=None, conflict_handler='error', add_help=True, allow_abbrev=True)

Bases: argparse.ArgumentParser

error(message: string)

Prints a usage message incorporating the message to stderr and exits.

If you override this in a subclass, it should not return – it should either exit or raise an exception.

methylcheck.cli.cli_parser()
methylcheck.cli.detect_array(df)

Determines array type using number of probes columns in df. Returns array string.

methylcheck.filters module

methylcheck.postprocessQC module